Design and campaign synthesis of pyridine-based histone deacetylase inhibitors

Bioorg Med Chem Lett. 2008 Apr 15;18(8):2525-9. doi: 10.1016/j.bmcl.2008.03.058. Epub 2008 Mar 22.

Abstract

A lead benzamide, bearing a cyanopyridyl moiety (3), was identified as a potent and low molecular weight histone deacetylase (HDAC) inhibitor. Various replacements of the cyano group were explored at the C3-position, along with the exploration of solubility-enhancing groups at the C5-position. It was determined that cyano substitution at the C3-position of the pyridyl core, along with a methylazetidinyl substituent at the C5-position yielded optimal HDAC1 inhibition and anti-proliferative activity in HCT-116 cells.

MeSH terms

  • Animals
  • Drug Design*
  • Enzyme Inhibitors / chemical synthesis*
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / pharmacology*
  • Histone Deacetylase Inhibitors*
  • Histone Deacetylases / metabolism
  • Humans
  • Molecular Structure
  • Pyridines / chemical synthesis*
  • Pyridines / chemistry
  • Pyridines / pharmacology*
  • Rats
  • Structure-Activity Relationship

Substances

  • Enzyme Inhibitors
  • Histone Deacetylase Inhibitors
  • Pyridines
  • Histone Deacetylases
  • pyridine